Source Code for Module Bio.FSSP.fssp_rec

 1  # A superclass for reading [f]ixed-column type [f]lat-[f]ile records. (e.g. 
 2 -class fff_rec: 
 3 -    def __init__(self, inrec=''): 
 4          self.data = inrec 
 5   
 6 -    def __repr__(self): 
 7          return str(self.data) 
 8      __str__ = __repr__ 
 9   
10 -    def __len__(self): 
11          return len(self.data) 
12   
13 -    def __getitem__(self, index): 
14          if isinstance(index, slice): 
15              return self.data[index] 
16          elif (isinstance(index, tuple) or isinstance(index, list)) \ 
17          and len(index) == 2: 
18              #Not sure if this is needed anymore: 
19              return self.data[index[0]:index[1]] 
20          else: 
21              return self.data[index] 
22   
23   
24  # Definition of the align section in a FSSP file 
25 -class align(object): 
26      abs_res_num = (0, 4) 
27      pdb_res_num = (4, 9) 
28      chain_id = 10 
29      res_name = 12 
30      ss1 = 15 
31      turn3 = 17 
32      turn4 = 18 
33      turn5 = (20, 22) 
34      acc = (34, 37) 
35      start_aa_list = 42 
36