Package Bio :: Package FSSP :: Module FSSPTools
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Module FSSPTools

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Several routines used to extract information from FSSP sections.

filter: filters a passed summary section and alignment section according to a numeric
attribute in the summary section. Returns new summary and alignment sections

For example, to filter in only those records which have a zscore greater than 4.0 and lesser than 7.5:

new_sum, new_align = filter(sum, align, 'zscore', 4, 7.5)

Classes [hide private]
  FSSPAlign
  FSSPMultAlign
Functions [hide private]
 
mult_align(sum_dict, align_dict)
Returns a biopython multiple alignment instance (MultipleSeqAlignment)
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filter(sum_dict, align_dict, filter_attribute, low_bound, high_bound)
Filters a passed summary section and alignment section according to a numeric attribute in the summary section.
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name_filter(sum_dict, align_dict, name_list)
Accepts a list of names.
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Variables [hide private]
  __package__ = 'Bio.FSSP'
Function Details [hide private]

filter(sum_dict, align_dict, filter_attribute, low_bound, high_bound)

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Filters a passed summary section and alignment section according to a numeric attribute in the summary section. Returns new summary and alignment sections

name_filter(sum_dict, align_dict, name_list)

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Accepts a list of names. Returns a new Summary block and Alignment block which contain the info only for those names passed.