Package Bio :: Package ExPASy :: Module Prosite :: Class Record
[hide private]
[frames] | no frames]

Class Record

source code

object --+
         |
        Record

Holds information from a Prosite record.

Members:
name           ID of the record.  e.g. ADH_ZINC
type           Type of entry.  e.g. PATTERN, MATRIX, or RULE
accession      e.g. PS00387
created        Date the entry was created.  (MMM-YYYY)
data_update    Date the 'primary' data was last updated.
info_update    Date data other than 'primary' data was last updated.
pdoc           ID of the PROSITE DOCumentation.

description    Free-format description.
pattern        The PROSITE pattern.  See docs.
matrix         List of strings that describes a matrix entry.
rules          List of rule definitions (from RU lines).  (strings)
prorules       List of prorules (from PR lines). (strings)

NUMERICAL RESULTS
nr_sp_release  SwissProt release.
nr_sp_seqs     Number of seqs in that release of Swiss-Prot. (int)
nr_total       Number of hits in Swiss-Prot.  tuple of (hits, seqs)
nr_positive    True positives.  tuple of (hits, seqs)
nr_unknown     Could be positives.  tuple of (hits, seqs)
nr_false_pos   False positives.  tuple of (hits, seqs)
nr_false_neg   False negatives.  (int)
nr_partial     False negatives, because they are fragments. (int)

COMMENTS
cc_taxo_range  Taxonomic range.  See docs for format
cc_max_repeat  Maximum number of repetitions in a protein
cc_site        Interesting site.  list of tuples (pattern pos, desc.)
cc_skip_flag   Can this entry be ignored?
cc_matrix_type
cc_scaling_db
cc_author
cc_ft_key
cc_ft_desc
cc_version     version number (introduced in release 19.0)

DATA BANK REFERENCES - The following are all
                       lists of tuples (swiss-prot accession,
                                        swiss-prot name)
dr_positive
dr_false_neg
dr_false_pos
dr_potential   Potential hits, but fingerprint region not yet available.
dr_unknown     Could possibly belong

pdb_structs    List of PDB entries.

Instance Methods [hide private]
 
__init__(self)
x.__init__(...) initializes x; see help(type(x)) for signature
source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self)
(Constructor)

source code 
x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)