Package Bio :: Package Emboss :: Module Applications :: Class IepCommandline
[hide private]
[frames] | no frames]

Class IepCommandline

source code

                     object --+            
Application.AbstractCommandline --+        
          _EmbossMinimalCommandLine --+    
                     _EmbossCommandLine --+

Commandline for EMBOSS iep: calculated isoelectric point and charge.


>>> from Bio.Emboss.Applications import IepCommandline
>>> iep_cline = IepCommandline(sequence="proteins.faa",
...                            outfile="proteins.txt")
>>> print(iep_cline)
iep -outfile=proteins.txt -sequence=proteins.faa

You would typically run the command line with iep_cline() or via the Python subprocess module, as described in the Biopython tutorial.

Instance Methods [hide private]
__init__(self, cmd='iep', **kwargs)
Initialize the class.
source code

Inherited from _EmbossCommandLine (private): _validate

Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Class Variables [hide private]

Inherited from Application.AbstractCommandline: parameters

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, cmd='iep', **kwargs)

source code 
Initialize the class.
Overrides: object.__init__