Package Bio :: Package Emboss :: Module Applications :: Class FProtParsCommandline
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Class FProtParsCommandline

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                     object --+            
                              |            
Application.AbstractCommandline --+        
                                  |        
          _EmbossMinimalCommandLine --+    
                                      |    
                     _EmbossCommandLine --+
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                                         FProtParsCommandline

Commandline object for the fdnapars program from EMBOSS.

fprotpars is an EMBOSS version of the PHYLIP program protpars, for
estimating trees from protein  sequences using parsiomny. Calling this
command without providing a value for the option "-intreefile" will invoke
"interactive mode" (and as a result fail if called with subprocess) if
"-auto" is not set to true.

Instance Methods [hide private]
 
__init__(self, cmd='fprotpars', **kwargs)
Create a new instance of a command line wrapper object.
source code

Inherited from _EmbossCommandLine (private): _validate

Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, cmd='fprotpars', **kwargs)
(Constructor)

source code 
Create a new instance of a command line wrapper object.

Overrides: object.__init__
(inherited documentation)