Package Bio :: Package Emboss :: Module Applications :: Class FProtDistCommandline

Class FProtDistCommandline

                     object --+            
                              |            
Application.AbstractCommandline --+        
                                  |        
          _EmbossMinimalCommandLine --+    
                                      |    
                     _EmbossCommandLine --+
                                          |
                                         FProtDistCommandline

Commandline object for the fprotdist program from EMBOSS.

fprotdist is an EMBOSS wrapper for the PHYLIP program protdist used to
estimate trees from protein sequences using parsimony

Instance Methods

[hide private]

__init__(self, cmd='fprotdist', **kwargs)
Create a new instance of a command line wrapper object. source code

Inherited from _EmbossCommandLine (private): _validate

Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from Application.AbstractCommandline (private): _check_value, _clear_parameter, _get_parameter

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, cmd=`'fprotdist'`, **kwargs)
(Constructor)

source code

Create a new instance of a command line wrapper object.

Overrides: object.__init__: (inherited documentation)

Class FProtDistCommandline

__init__(self, cmd='fprotdist', **kwargs) (Constructor)

init(self, cmd=`'fprotdist'`, **kwargs)
(Constructor)