Package Bio :: Package Blast :: Module Applications :: Class _NcbibaseblastCommandline

Class _NcbibaseblastCommandline

                     object --+    
                              |    
Application.AbstractCommandline --+
                                  |
                                 _NcbibaseblastCommandline

Known Subclasses:

Base Commandline object for (new) NCBI BLAST+ wrappers (PRIVATE).

This is provided for subclassing, it deals with shared options
common to all the BLAST tools (blastn, rpsblast, rpsblast, etc
AND blast_formatter).

Instance Methods

[hide private]

__init__(self, cmd=None, **kwargs)
Create a new instance of a command line wrapper object.

source code

_validate_incompatibilities(self, incompatibles)
Used by the BLAST+ _validate method (PRIVATE).

source code

Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from Application.AbstractCommandline (private): _check_value, _clear_parameter, _get_parameter, _validate

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, cmd=None, **kwargs)
(Constructor)

source code

Create a new instance of a command line wrapper object.

Overrides: object.__init__: (inherited documentation)

Class _NcbibaseblastCommandline

__init__(self, cmd=None, **kwargs) (Constructor)

init(self, cmd=None, **kwargs)
(Constructor)