Class NcbitblastxCommandline

source code

                     object --+            
                              |            
Application.AbstractCommandline --+        
                                  |        
              _NcbiblastCommandline --+    
                                      |    
              _Ncbiblast2SeqCommandline --+
                                          |
                                         NcbitblastxCommandline

Wrapper for the NCBI BLAST+ program tblastx.

With the release of BLAST+ (BLAST rewritten in C++ instead of C), the NCBI
replaced the old blastall tool with separate tools for each of the searches.
This wrapper therefore replaces BlastallCommandline with option -p tblastx.

>>> from Bio.Blast.Applications import NcbitblastxCommandline
>>> cline = NcbitblastxCommandline(help=True)
>>> cline
NcbitblastxCommandline(cmd='tblastx', help=True)
>>> print cline
tblastx -help

You would typically run the command line with the Python subprocess module,
as described in the Biopython tutorial.

Create a new instance of a command line wrapper object.