Package Bio :: Package Blast :: Module Applications :: Class NcbideltablastCommandline
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Class NcbideltablastCommandline

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                     object --+                
Application.AbstractCommandline --+            
          _NcbibaseblastCommandline --+        
                  _NcbiblastCommandline --+    
                  _Ncbiblast2SeqCommandline --+

Create a commandline for the NCBI BLAST+ program deltablast (for proteins).

This is a wrapper for the deltablast command line command included in the NCBI BLAST+ software (not present in the original BLAST).

>>> from Bio.Blast.Applications import NcbideltablastCommandline
>>> cline = NcbideltablastCommandline(query="", db="nr",
...                               evalue=0.001, remote=True)
>>> cline
NcbideltablastCommandline(cmd='deltablast', query='', db='nr', evalue=0.001, remote=True)
>>> print(cline)
deltablast -query -db nr -evalue 0.001 -remote

You would typically run the command line with cline() or via the Python subprocess module, as described in the Biopython tutorial.

Instance Methods [hide private]
__init__(self, cmd='deltablast', **kwargs)
Initialize the class.
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Inherited from _Ncbiblast2SeqCommandline (private): _validate

Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Class Variables [hide private]

Inherited from Application.AbstractCommandline: parameters

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, cmd='deltablast', **kwargs)

source code 
Initialize the class.
Overrides: object.__init__