Package Bio :: Package Alphabet :: Module IUPAC :: Class ExtendedIUPACProtein
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Class ExtendedIUPACProtein

source code

      object --+            
               |            
        Alphabet --+        
                   |        
SingleLetterAlphabet --+    
                       |    
         ProteinAlphabet --+
                           |
                          ExtendedIUPACProtein
Known Subclasses:

Extended uppercase IUPAC protein single letter alphabet including X etc.

In addition to the standard 20 single letter protein codes, this includes:

This alphabet is not intended to be used with X for Selenocysteine (an ad-hoc standard prior to the IUPAC adoption of U instead).

Instance Methods [hide private]

Inherited from Alphabet: __repr__, contains

Inherited from Alphabet (private): _case_less, _lower, _upper

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  letters = 'ACDEFGHIKLMNPQRSTVWYBXZJUO'

Inherited from SingleLetterAlphabet: size

Properties [hide private]

Inherited from object: __class__