Package Bio :: Package AlignIO :: Module MauveIO :: Class MauveWriter
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Class MauveWriter

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                      object --+        
                               |        
      Interfaces.AlignmentWriter --+    
                                   |    
Interfaces.SequentialAlignmentWriter --+
                                       |
                                      MauveWriter

Mauve/XMFA alignment writer.
Instance Methods [hide private]
 
__init__(self, *args, **kwargs)
Initialize.
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write_alignment(self, alignment)
Use this to write (another) single alignment to an open file.
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_write_record(self, record, record_idx=0)
Write a single SeqRecord to the file.
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Inherited from Interfaces.SequentialAlignmentWriter: write_file, write_footer, write_header

Inherited from Interfaces.AlignmentWriter: clean

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, *args, **kwargs)
(Constructor)

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Initialize.
Overrides: object.__init__

write_alignment(self, alignment)

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Use this to write (another) single alignment to an open file.

Note that sequences and their annotation are recorded together (rather than having a block of annotation followed by a block of aligned sequences).

Overrides: Interfaces.SequentialAlignmentWriter.write_alignment