Package Bio :: Package AlignIO :: Module EmbossIO :: Class EmbossIterator
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Class EmbossIterator

source code

                  object --+    
Interfaces.AlignmentIterator --+

Emboss alignment iterator.

For reading the (pairwise) alignments from EMBOSS tools in what they call the "pairs" and "simple" formats.

Instance Methods [hide private]
Return the next alignment in the file.
source code

Inherited from Interfaces.AlignmentIterator: __init__, __iter__, next

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _header = None
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]


source code 

Return the next alignment in the file.

This method should be replaced by any derived class to do something useful.

Overrides: Interfaces.AlignmentIterator.__next__
(inherited documentation)