Package Bio :: Package AlignIO :: Module EmbossIO
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Module EmbossIO

source code

Bio.AlignIO support for "emboss" alignment output from EMBOSS tools.

You are expected to use this module via the Bio.AlignIO functions (or the Bio.SeqIO functions if you want to work directly with the gapped sequences).

This module contains a parser for the EMBOSS pairs/simple file format, for example from the alignret, water and needle tools.

Classes [hide private]
  EmbossWriter
Emboss alignment writer (WORK IN PROGRESS).
  EmbossIterator
Emboss alignment iterator.
Variables [hide private]
  __package__ = 'Bio.AlignIO'