Class AlignAceScanner

source code

Scannner for AlignACE output

Methods:
feed     Feed data into the scanner.

The scanner generates (and calls the consumer) the following types of events:

noevent - blank line

version - AlignACE version number
command_line - AlignACE command line string
parameters - the begining of the parameters
parameter - the line containing a parameter
sequences - the begining of the sequences list
sequence - line containing the name of the input sequence (and a respective number)
motif - the begining of the motif (contains the number)
motif_hit - one hit for a motif
motif_mask - mask of the motif (space - gap, asterisk - significant position)
motif_score - MAP score of the motif - approx. N * log R, where R == (num. of actual occur.) / (num. of occur. expected by random.)

Feed in a AlignACE report for scanning.  handle is a file-like
object that contains the AlignACE report.  consumer is a Consumer
object that will receive events as the report is scanned.